Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015932720.1_cds_XP_016479164.1_70728
CDS Infomation

[gene=LOC107800494] [db_xref=GeneID:107800494] [protein=rop guanine nucleotide exchange factor 12-like] [protein_id=XP_016479164.1] [location=complement(join(32115..32468,32684..33004,33288..33557,33652..33726,33814..33968,34478..34594,34917..35049))] [gbkey=CDS]
Sequence

ATGATTCTTGAGACGAAAAACAATTCCATGGCTGGGGGCAGGGCGCTTAAACGTAATGAG
ACTTTCAAGTCACGTTTGGCCTATGATTCAGGTGTCGCGTCTAGCCCTCGTGCCCAACAG
AACCAGCCTTCAGATATGGAGCTAATGAAGGAAAAGTTTGCAAAGTTGCTCCTTGGTGAG
GATATGTCTGGTGGAGGAAAGGGTGTCTCTTCTGCGCTGGCTTTGTCAAATTCAATCACA
AACCTAGCAGCTTCCGTTTTTGGAGAACTGAAGAGATTAGAGCCAATGCCAGCCGAGACA
AAAGCCAAATGGAGAAAAGAAATTGGTTGGCTTTTATCAGTCACAGATCACATTGTTGAA
TTTGTTCCTTGTAATCAAAAATCAAAAGATGGAACAAACATGGAGGTTATGGTAACAAAG
CAGCGATCCGATCTTCAAATGAACATTCCAGCACTACGCAAGCTAGATGCAATGCTTATT
GATTGCTTAGATAGCTTTAAGGATCAAAGTGAGTTCTCCTATGTATCAAAAGATGATCAA
TCAGAGGATGGAAAAAACAGCAGGAATGATGAAAAATGGTGGATACCTACTCCTAAGGTT
CCTCCTAATGGCTTATCTGATCCCATGAGGAAATGGCTGCAATTTCAGAAGGATTCAGTA
AACCAAGTTCATAAAGCAGCCATGGCTATAAATGCTCAAGTCCTGTCAGAAATGGAGATC
CCAGAAAGTTATATAGAATCCCTACCTAAGAAAGGGAGAGCAAGCCTAGGAGATTCGATC
TACAAAAGCATCACTGACGAGTACTTTGATCCGGATTACTTCTTCACAACTATGGACTTT
TCTTCGGAACATAAAATTGTAGACCTAAAGAACAGGATTGAGGCTTCTGTAGTTATTTGG
AGAAGAAAGATGAACGCTAAAGATGGGAAATCAACCTGGGGTTCAGCTGTTAGCTTTGAG
AAGAGAGAAATCTTTGAAGAAAGAGCTGAGCTTGTCTTGCTGATTCTTAAGCAGCGCTTC
CCTGGAATTCCTCAGTCAACACTAGACATTAGTAAAATCCAATACAACAGAGATTTGGGA
CAAGCTGTTTTAGAAAGCTATTCAAGAATAATAGAAAGCAGGGCATTCACAATCATGTCA
CGAATTGAAGACGTTCTCCAAGCAGATGCCATGGCCCAAAATCCTTCCAATGGAGAAGTA
AAGAGATCACTACCAGATACAGAAGAAGTAGGTAAAACACTTCTGGACTTCATCGGTTGG
ACAGCGGACCAAGAAGATAACAACACAAAGAAAGATTTGAAAGAGGACTCAACTAAAGAT
GTTGATGTGAAGTTTCTTGGCAAACCTCCTAACATAGTCACCAACAAGAGATTTTCTTAC
CTAGAGAACTTAGGTATGTGTAGAAGTCCAACAGCCCGCCACTAA

Peptide Sequence

PEP ID

XP_016479164.1
PEP Infomation

PREDICTED: rop guanine nucleotide exchange factor 12-like [Nicotiana tabacum]
Sequence

MILETKNNSMAGGRALKRNETFKSRLAYDSGVASSPRAQQNQPSDMELMKEKFAKLLLGE
DMSGGGKGVSSALALSNSITNLAASVFGELKRLEPMPAETKAKWRKEIGWLLSVTDHIVE
FVPCNQKSKDGTNMEVMVTKQRSDLQMNIPALRKLDAMLIDCLDSFKDQSEFSYVSKDDQ
SEDGKNSRNDEKWWIPTPKVPPNGLSDPMRKWLQFQKDSVNQVHKAAMAINAQVLSEMEI
PESYIESLPKKGRASLGDSIYKSITDEYFDPDYFFTTMDFSSEHKIVDLKNRIEASVVIW
RRKMNAKDGKSTWGSAVSFEKREIFEERAELVLLILKQRFPGIPQSTLDISKIQYNRDLG
QAVLESYSRIIESRAFTIMSRIEDVLQADAMAQNPSNGEVKRSLPDTEEVGKTLLDFIGW
TADQEDNNTKKDLKEDSTKDVDVKFLGKPPNIVTNKRFSYLENLGMCRSPTARH

Transcript Sequence

Gene sequence data has not been registered.